Basic Information | |
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Taxon OID | 2124908044 Open in IMG/M |
Scaffold ID | A5_c1_ConsensusfromContig30002 Open in IMG/M |
Source Dataset Name | Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6186 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska |
Source Dataset Sampling Location | ||||||||
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Location Name | Bonanza creek, Alaska, USA | |||||||
Coordinates | Lat. (o) | 64.7 | Long. (o) | -148.3 | Alt. (m) | Depth (m) | .3 to .7 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000443 | Metagenome / Metatranscriptome | 1132 | Y |
Protein ID | Family | RBS | Sequence |
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A5_c1_00002540 | F000443 | N/A | MINPSVAWTKVDVLTSYQRLSGEIQMRVRLRETMNDPEPLFHLRNVSAEPLLPGAVSLNGVPEGLFSKALICGIRTIESEPPPPDQVEVTRRFAMYQAGTFIVTGAAEFPTALEPKMHGEVLLKNPFFPLVDATITIIGVAGKVWTQPIIWVNRAHMLALYLG |
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