NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A5_c1_ConsensusfromContig12632

Scaffold A5_c1_ConsensusfromContig12632


Overview

Basic Information
Taxon OID2124908044 Open in IMG/M
Scaffold IDA5_c1_ConsensusfromContig12632 Open in IMG/M
Source Dataset NameSoil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)956
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066625Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
A5_c1_01113630F066625N/AVAAHPRGFAVHLALPKRLDSVVKFRRGMMKRKFTATVAVLILTFANLQGQEVKFAADNLKYSREFYAKVHFVAVAELPQAFKYDRYPSDGPERIQCNDGTYLRQHGKAWAHLSDRMRTGLPIDYAEHDRYAMTFALRNDWGRTGEPVDKETARKLDGWIKLIDAAMNATPAELKLAEKSEADGRAQWVFEAPNPNGAQTKFTFRRPIGDSGDNVLLHEFSGSMRLDGDKVVAAGAADLVRFGFGYMMNFEGGQEVSEFVWEEMQGRKNRK

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