NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold A2_c1_ConsensusfromContig11546

Scaffold A2_c1_ConsensusfromContig11546


Overview

Basic Information
Taxon OID2124908043 Open in IMG/M
Scaffold IDA2_c1_ConsensusfromContig11546 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1057
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010111Metagenome / Metatranscriptome308Y
F017182Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
A2_c1_00659920F017182N/ANRAFSATIISNSVLLVLAVFAFGLIRHHGRLLGEEAAKSRNELAVRNLQLERLTAALSGQARSNMVAINMNSRLLLENYGGFLPRQGHEYAEQMKEAAAEMERLRQDLVGSPSPNGNGRA
A2_c1_00659930F010111AGGAGGMDYINNNGEKIGSLTVAIGKDKTVTINHLNNVTTVTTQDRTTGKVSSETFFGDSPFGK

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