Scaffold P3_CLC_ConsensusfromContig107604

Overview

Basic Information

• Taxon OID: 2124908041
• Scaffold ID: P3_CLC_ConsensusfromContig107604
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1030
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → unclassified Candidatus Peregrinibacteria → Candidatus Peregrinibacteria bacterium Greene0416_19 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015248	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
P3_CLC_01619560	F015248	N/A	VIRLLLPLAGIVSFFVLSWTTVRVLRPRDPKRFFLAYALLLLAGAAFVYQALWPIERIEDALGLASDLLLQLLACLTMWNAFYSVLWGFSGSLMYDMFNEPALRNRERLNRSYEGDGELDRILARRLPNLVRGGWVDRREKTLRLRPKGHVMALGTLASFKVFSLGMGGGVKKQ