NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Perma_A_C_ConsensusfromContig85680

Scaffold Perma_A_C_ConsensusfromContig85680


Overview

Basic Information
Taxon OID2124908032 Open in IMG/M
Scaffold IDPerma_A_C_ConsensusfromContig85680 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1331
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040393Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Perma_A_C_02841770F040393AGCAGMDADDSVPATPFGGAAVGTVLGPLDFTVSEQANVRYWSAAGLDHSVLRAGALYPPIAGNLTILLFQTIAEQPMLQTAQHLVCHRRANAGMPLTVSGTVAERYEKRGRQYAVVEARIALADGPLVWTSRATFTEVAR

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