Scaffold A2_v1_NODE_21025_len_4172_cov_8_300336

Overview

Basic Information

• Taxon OID: 2124908029
• Scaffold ID: A2_v1_NODE_21025_len_4172_cov_8_300336
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4222
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008956	Metagenome / Metatranscriptome	325	Y
F015964	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
A2_v1_00263160	F008956	AGG	MSAPEFLWTPEKDGLLRSMGAAGESTAAIAALLKCTPEAVRRRARLLKIKLARSPPGRKAKGK
A2_v1_00263180	F008956	AGG	MTAPGLAWSAEEEELLRSLAAAGESAVAIATLLKRSHHAVRKRADLLAIKLARSLPGSKPKWK
A2_v1_00263240	F015964	GGGGG	MSELTPQHVLADLFGSADFPAEILDPEHAAEIVFQRLNDAGFKIESAGN