NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold A2_v1_NODE_20252_len_1657_cov_5_941461

Scaffold A2_v1_NODE_20252_len_1657_cov_5_941461


Overview

Basic Information
Taxon OID2124908029 Open in IMG/M
Scaffold IDA2_v1_NODE_20252_len_1657_cov_5_941461 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050778Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
A2_v1_00190860F050778GAGMTCEECLSELATGSLREMAADSAVMQHCVTCPDCSRLTTQLRDREYNAANVLNNLPPMSNPITLAETSVRMAQRRRVGRVVVMLTGAALVVTIWIAAAKIFYPAMGRADLGNRTALRTETIPLQCLSPEQAADIINPYVRTRGSTYYTPKSGISAITVRGTEAEVAKSRDLLLTFESDPAAACRHTVGADLKALQDEIFAAQKSQGTGSASDKVPTPVKERTEVKKP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.