NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold beta3_all_NODE_4939_len_642_cov_8_571651

Scaffold beta3_all_NODE_4939_len_642_cov_8_571651


Overview

Basic Information
Taxon OID2124908028 Open in IMG/M
Scaffold IDbeta3_all_NODE_4939_len_642_cov_8_571651 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)692
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055311Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
beta3_all_00505970F055311GAGMAEDLLDYWVRLIKTIFPANAWINSHFSNNDHLIQIDWKLQNDSENPTKRSKKIEIIIKEGAIEDYLDKNKKDRELSDIMLKEFICERYNHFISDNDIHDNQYASTEKWLISRDVLNCKPSFDT

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