Scaffold SwRhBV22_Contig_3396

Overview

Basic Information

• Taxon OID: 2124908018
• Scaffold ID: SwRhBV22_Contig_3396
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Rose Lake, Michigan, USA - BV2.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 521
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere → Switchgrass Rhizosphere Microbial Communities From Michigan, Usa

Source Dataset Sampling Location

• Location Name: Central Sands area of central Wisconsin.
• Coordinates
  • Lat. (^o): 44.166906
  • Long. (^o): -89.649965

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073927	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
SwRhBV22_00058960	F073927	AGGCGG	MLTQRSEGLRRLLLICQIWITAGLFWLGVWVMVKFYSPPGGLTWRRYSIYCVLLVLGLTLEYLGRDSSRDYPLQTDLLREHRVSLRQTVASIGTLVIYLIATKDGFISRVFLFNFVPCFYLALLFSHHYLPAFLARRFFKGIRAEKTLL