NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OU_2_1_1_newblercontig12412

Scaffold OU_2_1_1_newblercontig12412


Overview

Basic Information
Taxon OID2124908016 Open in IMG/M
Scaffold IDOU_2_1_1_newblercontig12412 Open in IMG/M
Source Dataset NameSample 642
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLos Alamos National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)730
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Unclassified → Unclassified → Unclassified → Unclassified → → Environmental Microbial Communities From Lanl

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058019Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
OU_00893900F058019N/AVANQPDGHHDIAEAMLDILTDWLMPGLDLETVRDAQRSDTDGGADLRTALACGARARGRAARGCARRTWRQIKQAVTRGYIYKSSAVQVTLRGERREHERRNSSLPKAS

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