Scaffold t300_5605036

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold t300_5605036

Scaffold t300_5605036

Overview

Basic Information
Taxon OID	2124908013 Open in IMG/M
Scaffold ID	t300_5605036 Open in IMG/M
Source Dataset Name	Human Throat microbiome from visit number 1 of subject 763496533
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Los Alamos National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6266
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Human → Throat Swab Microbial Communities From Los Alamos National Laboratory, Usa

Source Dataset Sampling Location
Location Name	St. Louis, MO, USA
Coordinates	Lat. (^o)	38.646	Long. (^o)	-90.224	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076191	Metagenome	118	N
F084362	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
t300_00298560	F084362	GGAGG	MSLMNCTFTVRWSDEKNEPHAKTYATEDSAKRAKKWLLEHGVRSVDIAVKINNKPAGSLEDGDKPSETEAEQKGFWWEK
t300_00298600	F076191	AGGA	MKITAENPAEEALLWRIKALSDELVNQDNRSTNMPVWTILDNNEAGKDYGAVMYFTGKAAEQHIEENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPNNHYGFLRDAGY

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