Scaffold PBDC3_FIDWTPW02PR0R3

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold PBDC3_FIDWTPW02PR0R3

Scaffold PBDC3_FIDWTPW02PR0R3

Overview

Basic Information
Taxon OID	2124908004 Open in IMG/M
Scaffold ID	PBDC3_FIDWTPW02PR0R3 Open in IMG/M
Source Dataset Name	Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	518
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Wood → Composting → Bioreactor → Poplar Biomass Bioreactor → Poplar Biomass Bioreactor Microbial Communities From Brookhaven National Lab, Ny

Source Dataset Sampling Location
Location Name	Upton, NY
Coordinates	Lat. (^o)	40.869444	Long. (^o)	-72.886667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048052	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
PBDC3_02268190	F048052	GAG	VSSVHRISEALAERVHSLHVEKKGSGGQAFLDVHVKRDLQPAELRSSQFYKMGDVVEFKDKGSGSVMRSPVTAVLPNAVVVARNDQPKQIPLTQVRAVFDSSRIERGSGETLLLQEKIKQGDRVFEKGSRQVIAEIKSSTVYFKSGLEL

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