Scaffold FNTS007_GKN1E7E02JI5H8

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold FNTS007_GKN1E7E02JI5H8

Scaffold FNTS007_GKN1E7E02JI5H8

Overview

Basic Information
Taxon OID	2119805009 Open in IMG/M
Scaffold ID	FNTS007_GKN1E7E02JI5H8 Open in IMG/M
Source Dataset Name	Soil microbial communities from sample at FACE Site NTS_007 Nevada Test Site
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	519
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location Name	Nevada Test Site FACE
Coordinates	Lat. (^o)	36.766667	Long. (^o)	-115.95	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029550	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
FNTS007_01294350	F029550	GGA	MPSQEAKMADRATKERKLVALMVNDLGPGFGEGEMDGLRKEVGALADEDLDGTLAERLGLPDPADEEALDRALLHVEEPEIISGQDEGGFTGAPDMSHEPRSEEREA

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