NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BSDYNP_contig04084__length_1667___numreads_74

Scaffold BSDYNP_contig04084__length_1667___numreads_74


Overview

Basic Information
Taxon OID2119805007 Open in IMG/M
Scaffold IDBSDYNP_contig04084__length_1667___numreads_74 Open in IMG/M
Source Dataset NameHot spring microbial communities from Beowulf Spring, Yellowstone National Park, Wyoming, USA - YNP_Beowulf Spring_D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1667
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.733Long. (o)-110.709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027904Metagenome / Metatranscriptome193N
F067921Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
BSDYNP_01059420F027904GGTGGMEKYNPPEYDLFNLNNGSTLVGTSPVTLLYEGQPNATVVVPPDLTLRVKQVIIQNTTSSVITVQLQAVTTQTGLPSPVNKTPPIPVPANSAVTLDEDEWSINVKTGYSLAAVSSAANSANVFVKAYFVKGTGSPI
BSDYNP_01059430F067921GGGGGMYFERINDKILRNGQYLLLSYSGAKNPLQAMFTGFRVVKHNVTTLYYNFATQVPNFLPMAPYGTSPGPTNSPYYIDNFSFSLQQVKNVTDMFKITNTDDAYQVFYGISPSYLRVVNKIQQQFVSVLEQNIYPSPSFVEMGIDGFQSPLNNPSEKTEFIVFVNLTYNVTLMNTATIPIMPAFNFVINRMTLEPLDREELKKAILAGFPIRSLGAVDSSIMISPDNYPGLITLSYKEIYGG
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