Scaffold ADL13m1u_contig05216__length_919___numreads_18

Overview

Basic Information

• Taxon OID: 2100351014
• Scaffold ID: ADL13m1u_contig05216__length_919___numreads_18
• Source Dataset Name: Hypersaline microbial communities from Antarctic Deep Lake - 13m 0.1um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 919
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location

• Location Name: Deep Lake Antarctica
• Coordinates
  • Lat. (^o): -68.54
  • Long. (^o): 78.18
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087432	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
ADL13m1u_00270920	F087432	AGGAGG	MIIYENGEYTPCTYRVTLQNRGVEETHYANFRTHWEDMVAKHDHLTNLNFEEVTFSAEQDVRLQEISELSITEGFQAEVRKYVETGDFPDGYEHPLSDLKLKKEREQHRNDIDDAYQMILESEGLI