Scaffold ADL13m1u_contig02650__length_1462___numreads_46

Overview

Basic Information

• Taxon OID: 2100351014
• Scaffold ID: ADL13m1u_contig02650__length_1462___numreads_46
• Source Dataset Name: Hypersaline microbial communities from Antarctic Deep Lake - 13m 0.1um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1462
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Xenophilus → unclassified Xenophilus → Xenophilus sp. Marseille-Q4582 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location

• Location Name: Deep Lake Antarctica
• Coordinates
  • Lat. (^o): -68.54
  • Long. (^o): 78.18
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028050	Metagenome	193	N

Sequences

Protein ID	Family	RBS	Sequence
ADL13m1u_01242810	F028050	N/A	MDIRSFTRKDTATVPIQDPLGGKTDIVVEVYGRDSKAYRAAAVELARDFDATDEAQASERGAKLLQSCIVSWQNVEVDGKAIKPDSPEALAMLKDESLDWFVSQISVAIQKR