Scaffold ASMM170b_GM97KZC01CGJBK

Overview

Basic Information

• Taxon OID: 2100351011
• Scaffold ID: ASMM170b_GM97KZC01CGJBK
• Source Dataset Name: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from medium methane PC12-240-170cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 556
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0678
  • Long. (^o): -145.54687

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028523	Metagenome / Metatranscriptome	191	Y
F064236	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
ASMM170b_09402280	F028523	AGG	VAKMPHTNGEILPSNVKAVATYDIGSYGEDLFLPLTDVGLTETALTFSTATVTRDTTDSNQPIDTYPRVFSDTDSGLLLNEGNDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTN
ASMM170b_09402290	F064236	N/A	GLMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN