Scaffold MXTR_Contig21295

Overview

Basic Information

• Taxon OID: 2088090020
• Scaffold ID: MXTR_Contig21295
• Source Dataset Name: Sample MX_TR1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: National Research Council of Canada
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1097
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Discoba → Heterolobosea → Tetramitia → Eutetramitia → Vahlkampfiidae → Naegleria → Naegleria gruberi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Stomach → Endoperitrophic Space → Rumen → Rumen Microbial Communities Of Musk Oxen From Alaska

Source Dataset Sampling Location

• Location Name: Fairbanks, Alaska
• Coordinates
  • Lat. (^o): 64.880776
  • Long. (^o): -147.869984

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013600	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
MXTR_00119870	F013600	N/A	MRSYLGLVLFTLVACASAVDQTQYILANKADLAQYGKLEGKKEVLDFLLGVAYGLDVIMGDPTACIGDFETMVSDFNEGVQLIAHGIKSLSVKSVSQGLLAFADGVEKLANSFKDCGIEKTAESIIKIVGEIKSGQVMAFVKDEVIHIFSHGRDLIHLFKSLASEWKDGDFYEAGKDVGEILGILIDQENDQVSVQATPEDIYNLIRGVAEGMGQTMGDPSLCTNDIDIIVAQMNACWSDLKTGVRRLSVKTIKRALQEFADAIESIGKSLDACGLTNLEEAIRELVKEIRGGKVFQVLIREVAHIFCHGKELLNDFKAVSSFWTNGQFEDCGKKVGEIIGFLVVIPPAMH