Scaffold GPICI_9098279

Overview

Basic Information

• Taxon OID: 2088090015
• Scaffold ID: GPICI_9098279
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1056
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Depth (m): .1016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040395	Metagenome / Metatranscriptome	162	Y
F043689	Metagenome / Metatranscriptome	156	Y
F050357	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
GPICI_03526130	F040395	N/A	IIGAGAGIPPEMSNATSWTIAESFVLLVGYVLACVVAVWFVAWVDLKLSSRRLFREIYRELGIGRHPPR
GPICI_03526140	F050357	AGGAG	VEGIRLWRANRQKLVGMVYLDQGVLDLDIQDDHERALVEDVLEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEDGEPTTG
GPICI_03526150	F043689	AGGAGG	MTILMDTVRIEAPKRSPARPASPLDPSWNDGSEIPSSERSVQDRSRSTQWDRLAMGHGQSLWREAA