Scaffold GPICI_9090626

Overview

Basic Information

• Taxon OID: 2088090015
• Scaffold ID: GPICI_9090626
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1342
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Depth (m): .1016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025337	Metagenome / Metatranscriptome	202	Y
F025544	Metagenome / Metatranscriptome	201	Y
F090028	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
GPICI_00316280	F090028	N/A	YFAIVGAVLVALFFFADATLEKGASPVVTSERVGLPKPWQPDPIQTLVSKPAPEPDMTTPEVLAAQPKTAAEAPKKKHVTRKRSPDDHYQQNQAWSRDRDRGPFGFFFGRF
GPICI_00316300	F025337	AGGAG	MIADSLEHRRVKELEKRVADLERLVGWVTGLLIDFVAVVIAIGAAIFVAGDYYRLSAVDGSVVLAFMVTMLALNFIFRKVASWCFDG
GPICI_00316310	F025544	N/A	AALTSKHHWLIIGCNSCGTVVDLDLRVKPRDPEASIRIALRDVQCPRCNGNGRPRIMALARHPSI