Scaffold GPICI_8691405

Overview

Basic Information

• Taxon OID: 2088090015
• Scaffold ID: GPICI_8691405
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 6683
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Depth (m): .1016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022905	Metagenome / Metatranscriptome	212	N
F057493	Metagenome / Metatranscriptome	136	N
F081935	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
GPICI_03275110	F022905	N/A	MILVAIVSLVSCPTLANAEIKVTPPLNWQPSPNNNSTSMIWYQNSTKSVFGINKAPDILSFPLFLAGPFVAQFLTDKGVLESADQISFGHSNYGYRYILNLSSPSKLLNSFSGLPQIGSFLTTIPQGYDVPYKGMLILTQKQGDLYAIIFLSPIEHFDSVLRDIKASVDSIQFN
GPICI_03275130	F081935	GAG	MRIERLPAPIADEQRQVKIGSYMNDTSAFWYIRKETNSERKRTCIICGKTASYLVYFQIDGAKLKEKYCEQCLDSWVYLDLDETGIPNISK
GPICI_03275150	F057493	GAGG	LRDSKRDKVYGCLNCGHQHSETKAEVGSILYCKDCDKYEQIVHISETGISTSKRLEKDELFQLLSEGRLKIVDNNDIRN