Scaffold GPIPI_17428475

Overview

Basic Information

• Taxon OID: 2088090014
• Scaffold ID: GPIPI_17428475
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3409
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007729	Metagenome / Metatranscriptome	346	Y
F057633	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_03521790	F007729	AGGAGG	MMKTFLLLAVGSVATAGALPSLPAKIILSAFVLMAVLTQAARRAPAGYEDENGFHLIRPRRPVAEGRRGAWKRLLGGWLFSDSRRPAKA
GPIPI_03521800	F057633	AGGAGG	MKTFLLLAVSSVITAGVLPSLPAKIVLSAFVLMAVVSEAARRISG