Scaffold GPIPI_17278332

Overview

Basic Information

• Taxon OID: 2088090014
• Scaffold ID: GPIPI_17278332
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2817
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003298	Metagenome / Metatranscriptome	495	Y
F003675	Metagenome / Metatranscriptome	474	Y
F014173	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_01112540	F014173	GGAG	MVKHGALSKSHVNQLLRSNDARVRRAAFTLLESSNPRLKTNSELFVEITRFIWNANPSYDVYHEFIQRHFQANYKVHELVSARVK
GPIPI_01112560	F003675	GGCGG	LEATRRSFNKDFLLALAADFKKHGASAIEKVRKQQPAVYMKICALLVPREMQIEHSGGVKAMTDEQIERGIELIKEMLAEREAGANAKVIEGEAEAVLSLPPPVSAKNS
GPIPI_01112580	F003298	GAG	VRIFKTKILFSMASLLLFVAPSAGGDFTYQEYAKASELWKRGVVFGISRYMSVVAQPDEEAPYPVRTAFQRCLASSTDTLLVREVESYAASNPASAKGPMVAIIMRAFFNLCRAEIEKAQSPKTAPSQR