Scaffold GPIPI_17047199

Overview

Basic Information

• Taxon OID: 2088090014
• Scaffold ID: GPIPI_17047199
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 13856
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (30.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000796	Metagenome / Metatranscriptome	887	Y
F006999	Metagenome / Metatranscriptome	360	Y
F104656	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_00957130	F000796	N/A	LIPRALRETQSKSVGAMLAVANLMRGVVTWIFLVGIVGLPYWIVLIPLHDLLLGDQLRRQLAQSPALWLTFGSLAAGHFWKAFQCGYDAMPDKELKQRVRWDVYLLILRTMAMFIMAAHGLAFILVPLMALLLSYFEIWPERALGAVFGDPSRLYEYDPEDPASSRRRP
GPIPI_00957250	F006999	GGA	MPALLRADEKEPMLQALGQLEQAWRSTTPCEVSSNACQTREIWLAQQAAQAADQYLNTPDAKESHWRLVAQSVIKYSQARSEAYAAYVRARNQDPDAAEKAYHSIVDPLERDFIGQLKATLQSDVNSREIAERFGLVDF
GPIPI_00957260	F104656	N/A	MKNPRFPALSFCSALLIGIGWTLIVIGLLVLAFYAISLFASSAGDFGAILTTAMTFGLVSLALVLIGLFTVTGGESIRVFLAIEANTHAWTSVVQRPE