Scaffold GPIPI_17011697

Overview

Basic Information

• Taxon OID: 2088090014
• Scaffold ID: GPIPI_17011697
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2278
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047138	Metagenome / Metatranscriptome	150	Y
F061364	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_00733400	F047138	GAG	MRSTRILLIVGLLASSAALAQSHVRLSYEFAVPRGETKDYIDRFSSRGAHLDASFELSYAFHLELSAGLNSFNAVKQGVLTTTDGQDVSGKQFRYLNVIPVMGGFAFHVPLRHGGRVWAGVNGGAAYFERVIDVGLNEYTLSDWQWGVQPHVGIAFGCGKGGTALFFDARWNYFWERHGLPVQQYFSFGVGLLFGGAPAKHK
GPIPI_00733420	F061364	GGAG	MVQRGAVDAWLVLAVAALAAALLWWRSRVDDARRDDAWDALARDFMLGFDAGSRSIRGKYRLLRLDITARRTLLGLGPWRTRIDAQYEGVVPERLALGITGAGALRAAARSPEALTLWLDAERRRALLPPLLQGGVRVSGHTATLETPGLLTDPEALRTSLARLAELAKLLSLR