Scaffold GPIPI_16928634

Overview

Basic Information

• Taxon OID: 2088090014
• Scaffold ID: GPIPI_16928634
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2982
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013837	Metagenome / Metatranscriptome	268	Y
F040395	Metagenome / Metatranscriptome	162	Y
F043689	Metagenome / Metatranscriptome	156	Y
F050357	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_01544290	F013837	GGAGG	MTTLMDPDRTEAPEGPRSKPAAAVDARRDTPTESRSLERSFEVASRGGYARTVVGRLAYFDEEAQTYMVLTRSGALVRVPLRDITSSRGVPRTGPIVADALSRMSRLRSATTVSPT
GPIPI_01544300	F043689	AGGAGG	MTTLMDTVRIEAPKRSPVRPASPLDPSWDDGSEIPSSERSVQDRSRNTQWDRLAMGRGQSLWREAA
GPIPI_01544310	F050357	AGAAG	MVYLDKGVLDLDIQDDHERALVEDVLEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGISEDGEPTTG
GPIPI_01544330	F040395	N/A	REAKEAASAASSTIDRGSVLRVLGIIGAGAGIPPEMSNATSWTLAESFVLLFGYVLAFVVAVWFVAWVDRKLSSRRLFREIYRELGIRRYPPR