Scaffold GPIPI_16678183

Overview

Basic Information

• Taxon OID: 2088090014
• Scaffold ID: GPIPI_16678183
• Source Dataset Name: Soil microbial communities from Great Prairies - Iowa, Native Prairie soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2345
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003277	Metagenome / Metatranscriptome	496	Y
F034312	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
GPIPI_03229690	F003277	GGA	MATLEAMGGPRHSQGSKLILEQPVAVPDEHAELVKADQRFQAALDVAIATGGERIEAVEATVQLKRRSTKLG
GPIPI_03229700	F034312	AGG	MSEWVLHCSIGERHIRRSQPTKDAALKDACAQLLQGHSVNRIVGPNETIPAERVKDWCAKHRP