NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold GPIPI_16548337

Scaffold GPIPI_16548337


Overview

Basic Information
Taxon OID2088090014 Open in IMG/M
Scaffold IDGPIPI_16548337 Open in IMG/M
Source Dataset NameSoil microbial communities from Great Prairies - Iowa, Native Prairie soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3781
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008204Metagenome337Y

Sequences

Protein IDFamilyRBSSequence
GPIPI_03669510F008204GGAMVLFGFLAAGVAAQMSQQSPPSLERGAEASSRSSQARPQAELKRFSLLSGTSIDFSPDWIEREQMPLPPSPRLAPFAPQVTFLEFAAMENPKVHSVLRIATTTNPFLGGDEVALDVQMHSAPGSGSGLADYLFYFFFSPPRDCLDGGSEAYRKARSQAEMPDQTVSPDLSIPTYCKHAPTLADFYSRELSPGVAFQFTNGVERASGIYPEFYLMPMEKMEANGLTFYVFEAQGRMQLDLATVDHFNLPDEMQGAQADFFLAVGAPSPFPFFRDQQRKNVPLIQVAYAGIGLGPDKRDIFMRLLRQVHSR

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