Scaffold ASHM260b_contig00072

Overview

Basic Information

• Taxon OID: 2088090012
• Scaffold ID: ASHM260b_contig00072
• Source Dataset Name: Marine sediment microbial communities from Arctic Ocean, off the coast from Alaska - sample from high methane PC12-236-260cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1246
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Coastal Water And Sediment → Coastal Water And Sediment Microbial Communities From Arctic Ocean, Off The Coast From Alaska

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0678
  • Long. (^o): -145.54687

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012505	Metagenome / Metatranscriptome	280	Y
F043412	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
ASHM260b_03283660	F012505	N/A	MIYNADEVTFILAKTLDEARQWAIMYCDHSDEIIVREVSDIKYKY
ASHM260b_03283680	F043412	N/A	MEMTKEELERRVRELTASIETFTNDADLLKKDLAAANQRLAVVNRPKITQDQMTEIQDAINEIVSNIDFTDCNNYDVDFEIDYDSRLAISSIEFNNTHEIVDDISSEIECLFNVIQPEDE