Scaffold P3_DRAFT_NODE_169007_len_2359_cov_33_435352

Overview

Basic Information

• Taxon OID: 2088090008
• Scaffold ID: P3_DRAFT_NODE_169007_len_2359_cov_33_435352
• Source Dataset Name: Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2409
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location

• Location Name: Bonanza creek, Alaska, USA
• Coordinates
  • Lat. (^o): 64.7
  • Long. (^o): -148.3
  • Depth (m): .3 to .7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002774	Metagenome / Metatranscriptome	531	Y

Sequences

Protein ID	Family	RBS	Sequence
P3_DRAFT_01619810	F002774	GAG	VVLVGVCVAVVTGACSPRDNGDEPQVAVRVIDSAYAPTWEPTADSGTIYRVEIRSPAGVDTIGNVVPPFPTVTGDTLVVGLLQVSEDSSTPERKIFRLRLGQHRVETLPVPSDVWSSFHDVVVSPDGRYLAYVAEDTTPSIPATYGLVRELATGAIIIKGPGGGGCDCDVDTNHARWFAPDSFEIAVSHENTDNVWLLLSGVASARRLHVDTLSEEPNWH