Scaffold LWFCAnN_contig00987

Overview

Basic Information

• Taxon OID: 2088090007
• Scaffold ID: LWFCAnN_contig00987
• Source Dataset Name: Freshwater sediment microbial communities from Lake Washington, Seattle, for methane and nitrogen Cycles - from flow sorted anaerobic plus nitrate
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 815
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location

• Location Name: Lake Washington, Seattle, Washington, USA
• Coordinates
  • Lat. (^o): 47.63
  • Long. (^o): -122.27889
  • Depth (m): 62

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
LWFCAnN_08746270	F010081	N/A	MKEQIDAIIKKHCLKMQEVDKNKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYNLN
LWFCAnN_08746280	F007859	GAG	MKNLLIIALLCTGCTSGMYLRYSYNRALENLPPCSRIHAINNDYITYSMIKNSTNSVYTVYTNYYRAYYNCDGKITKIIKN
LWFCAnN_08746290	F008688	N/A	MNRFNKIIVGGLAAILLTAMTVEPPKIKVYLITSYRGNDLTIEKVYLKKENAEKYRDMYKDSHNYSVEERELTE
LWFCAnN_08746300	F013524	N/A	LRQFTSYNCNNLLDAKLCEDIRYLCDEVERFSKEIVKANNHMDEDHITIQRYKKKLSKYESI