NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold LWSO_GFMCQXZ02J6N6W

Scaffold LWSO_GFMCQXZ02J6N6W


Overview

Basic Information
Taxon OID2088090005 Open in IMG/M
Scaffold IDLWSO_GFMCQXZ02J6N6W Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Washington, Seattle, for Methane and Nitrogen Cycles, original sample replicate 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Sediment → Freshwater Sediment Microbial Communities From Lake Washington, Seattle, Usa, For Methane And Nitrogen Cycles

Source Dataset Sampling Location
Location NameLake Washington, Seattle
CoordinatesLat. (o)47.052Long. (o)-122.267889Alt. (m)Depth (m)62
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019149Metagenome231Y

Sequences

Protein IDFamilyRBSSequence
LWSO_05697340F019149GGAGMAQSVTIAKHDQRKRLVLPDDFVAEAPYGEYIIREGKGHLSIVAIPPPKPRRTYAATPALERKLREAKGAKEVDCPPDFFTAPLDD

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