NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold P1_DRAFT_NODE_251474_len_1200_cov_12_284166

Scaffold P1_DRAFT_NODE_251474_len_1200_cov_12_284166


Overview

Basic Information
Taxon OID2088090004 Open in IMG/M
Scaffold IDP1_DRAFT_NODE_251474_len_1200_cov_12_284166 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1250
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067243Metagenome126N

Sequences

Protein IDFamilyRBSSequence
P1_DRAFT_00858100F067243AGGMRATAEQSLRYRLTTSGLVLTLVDPHGSGLWRLSRPTDGLELLTLAGAGPELLRCGYIIDRRGVETAVALGHRQDGYLPEEVRFTTRRIRWRQELTVDPVLVVGDLWVAEAVGTFDVVSVEGRDSAQTTGLDGQFRHVF

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