NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold P1_DRAFT_NODE_163953_len_616_cov_13_556818

Scaffold P1_DRAFT_NODE_163953_len_616_cov_13_556818


Overview

Basic Information
Taxon OID2088090004 Open in IMG/M
Scaffold IDP1_DRAFT_NODE_163953_len_616_cov_13_556818 Open in IMG/M
Source Dataset NamePermafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)666
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil → Soil Microbial Communities From Permafrost In Bonanza Creek, Alaska

Source Dataset Sampling Location
Location NameBonanza creek, Alaska, USA
CoordinatesLat. (o)64.7Long. (o)-148.3Alt. (m)Depth (m).3 to .7
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034514Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
P1_DRAFT_00825500F034514N/ARSDHVAVGGLDAVDLSGPRADVFVAVTPPYRLLRVQLKKGVVVDGVSDADLRFINFDKDFRIAVPADVIDFSNLSTLSPIYTVVSVDTSGCASPCVVSALVKNLGGKREARAPSTITFTMIDAASKRTVGSCQVQVQPDVGYNATTTVSCTISRVSGQSVNAAIVSATPDNPGGA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.