NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ADL24m1u_GMS257A01DJM7N

Scaffold ADL24m1u_GMS257A01DJM7N


Overview

Basic Information
Taxon OID2084038011 Open in IMG/M
Scaffold IDADL24m1u_GMS257A01DJM7N Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 24m 0.1um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020827Metagenome222Y
F058558Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
ADL24m1u_01354300F058558N/AVVKTDDHDVAERAIMAGLSWAGVNDDEYRMLWTRDHFNTPDQNHVAVIFIVSTEYMMDLPTMVERGMATSINEVELKSVYA
ADL24m1u_01354310F020827N/AMKHDIAGWYEIGQRWKLWKDGQLRDFYIDHIHVFESDDSDTIEVEHYLSDGTMITKLTVTAFDVVPVVKNIEPVEKAEPSVAASSN

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