NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold ADL20m3uS_contig13068

Scaffold ADL20m3uS_contig13068


Overview

Basic Information
Taxon OID2081372007 Open in IMG/M
Scaffold IDADL20m3uS_contig13068 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1478
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location
Location NameDeep Lake Antarctica
CoordinatesLat. (o)-68.54Long. (o)78.18Alt. (m)Depth (m)24
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020827Metagenome222Y
F058558Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
ADL20m3uS_01124760F058558GGAGMNINDKFRHRAFKVVVKTDDHDVAERAIMDGLSWAGVNDDEYRMLWTRDHFNTFGQNHVAVIFIVSTEYMMDLPTMVERGNATSINEVELQSVDA
ADL20m3uS_01124770F020827N/AMKHDIAGWYEIGQRWKLWKDGQLRDFYIDHIHVFESDDSDTIEVEHYLSDGTMITKLTVTAFDVVPVVKKXRTREKAGP

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