Scaffold ADL20m3uS_contig12656

Overview

Basic Information

• Taxon OID: 2081372007
• Scaffold ID: ADL20m3uS_contig12656
• Source Dataset Name: Hypersaline microbial communities from Antarctic Deep Lake - 24m 3.0um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3992
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Antarctic Deep Lake

Source Dataset Sampling Location

• Location Name: Deep Lake Antarctica
• Coordinates
  • Lat. (^o): -68.54
  • Long. (^o): 78.18
  • Depth (m): 24

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008667	Metagenome	330	N
F034413	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
ADL20m3uS_00198980	F008667	GGAG	MTPGSADFRRANRNPSYQCLPRAEYVQRAVEMAPRGSQLAKKLTVDDVRAMRLNAMVALTSIRQRCLACRRLWFIKIRKGERWGVVR
ADL20m3uS_00199010	F034413	N/A	MAGTADYNFLPKALQSAIRLPIYYRACAVLAEPTRAARRAKLDAEPESVRALVEAEALRLHKLRPKGLQ