NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold FNTS_GKKEVUV02JTLBL

Scaffold FNTS_GKKEVUV02JTLBL


Overview

Basic Information
Taxon OID2081372006 Open in IMG/M
Scaffold IDFNTS_GKKEVUV02JTLBL Open in IMG/M
Source Dataset NameSoil microbial communities from sample at FACE Site NTS_071 Nevada Test Site
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)532
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Source Dataset Sampling Location
Location NameNevada Test Site
CoordinatesLat. (o)36.766667Long. (o)-115.95Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019791Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
FNTS_04988160F019791AGGAGGMYWYNPATRTSERVAAPANDEQAVSMLAGHPDSARFVSEYAELRRSGAPIERALVLVGHEERLREHEHAPVRLAWRDRPARPRPTALAYELLLAARLREQGE

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