Scaffold OV003_911558

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold OV003_911558

Scaffold OV003_911558

Overview

Basic Information
Taxon OID	2081372003 Open in IMG/M
Scaffold ID	OV003_911558 Open in IMG/M
Source Dataset Name	Marine microbial communities from Deepwater Horizon Oil Spill, sample, DHOS OV003
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	847
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine → Marine Microbial Communities From Deepwater Horizon Oil Spill

Source Dataset Sampling Location
Location Name	Deepwater Horizon Oil Spill, Gulf of Mexico
Coordinates	Lat. (^o)	28.672222	Long. (^o)	-88.4375	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063768	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
OV003_01826620	F063768	GAGG	MGDGRESNPVTTAEGAGEFIVLAEFSTALSGLLAGWSTDGADPDTSATMASLAARLGEHAGWWMDRTPESVLLEGEQAAASGAGRLTDILALLDVPPSDRRSAVAPVLDRLVAYLGVLSERLSPVGDAPALRTIRLVLADLEDRPR

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