Scaffold OSPB_contig03043

Overview

Basic Information

• Taxon OID: 2077657023
• Scaffold ID: OSPB_contig03043
• Source Dataset Name: Hot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - sample OSP_B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1261
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: One Hundred Springs Plain, Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.7315
  • Long. (^o): -110.711389

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075084	Metagenome / Metatranscriptome	119	N
F080245	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
OSPB_00209720	F075084	GAG	MRPCRKDLCLIYSLGVDYAKLMDFTSQNPTGKLFRRAGVAMVYARRLSASWYGYDTGVLLKRSLRRILRWSINYCRIMRELGLESEYCRRYTVYDEVPCERVSEYDVEVAYSRIIHMIANYNSETVSKLLTKMTEECSTYEVRG
OSPB_00209740	F080245	N/A	RGDKAMIFVWSARVIIPGFRDEVFVSPALINRYAELTEDVYEVGMFMVPHRGHALLFLPTMVIKVDDELMKNLEQTSIEDLNIPLNTISNVFT