NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold OSPB_GN81VBF01AIQPG

Scaffold OSPB_GN81VBF01AIQPG


Overview

Basic Information
Taxon OID2077657023 Open in IMG/M
Scaffold IDOSPB_GN81VBF01AIQPG Open in IMG/M
Source Dataset NameHot spring microbial communities from One Hundred Springs Plain, Yellowstone National Park, Wyoming, USA - sample OSP_B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location
Location NameOne Hundred Springs Plain, Yellowstone National Park
CoordinatesLat. (o)44.7315Long. (o)-110.711389Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076263Metagenome / Metatranscriptome118Y
F081547Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
OSPB_00580500F081547GGAGMPYLRGVFVNFGEETYYLSCGVVNGGNLDTETYTINQPDLMMVRMGRDLYVVTSELKLLIPVEPVKVLLNSETSKVY
OSPB_00580510F076263AGGALDDLEDICARIPEGVTFHPTLEIHRKHANEEATYIKFDCRNHKYTLTTVRTGVAKTTRVSSREELFRRLFPEYPPGYSEEIWGGE

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