Scaffold ASA120_GJFD58A02F5QAY

Overview

Basic Information

• Taxon OID: 2077657018
• Scaffold ID: ASA120_GJFD58A02F5QAY
• Source Dataset Name: Marine sediment archaeal communities from Santa Barbara Basin, CA, that are methane-oxidizing, sample 0-3 cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 503
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 3 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Santa Barbara Basin, Ca, That Are Anaerobic And Methane-Oxidizing

Source Dataset Sampling Location

• Location Name: Santa Barbara Basin
• Coordinates
  • Lat. (^o): 34.21
  • Long. (^o): -119.5
  • Depth (m): to .03

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039645	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
ASA120_04820600	F039645	GAGG	MPTPITAFADAAAKYGDIDPNDIEAVQKWFAGELPKLPVDTIEQVLHDLLERDGTTAEREIVPIYPKRVPLPSLGSSPPALPPLLAEQWRTL