Scaffold ZODLETONE_B1_GLDH0LQ01B4C9D

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold ZODLETONE_B1_GLDH0LQ01B4C9D

Scaffold ZODLETONE_B1_GLDH0LQ01B4C9D

Overview

Basic Information
Taxon OID	2077657000 Open in IMG/M
Scaffold ID	ZODLETONE_B1_GLDH0LQ01B4C9D Open in IMG/M
Source Dataset Name	Sulfur spring sediment and crust microbial communities from Zodletone, Oklahoma, USA - B1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Mogene LC
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	541
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Warm (34-42C) → Sediment → Sulfur Spring Sediment And Crust → Sulfur Spring Sediment And Crust Microbial Communities From Zodletone, Oklahoma, Usa

Source Dataset Sampling Location
Location Name	Southwest Oklahoma
Coordinates	Lat. (^o)	35.100293	Long. (^o)	-98.749601	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037503	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
ZODLETONE_00156660	F037503	N/A	MPLGAASWLSVIEVELPIGCEGFTTYQSLTNSECYNIYTGVRRWVLRSGAERERTQTIS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.