NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold prs_FIHLEPW02TA1K9

Scaffold prs_FIHLEPW02TA1K9


Overview

Basic Information
Taxon OID2070309004 Open in IMG/M
Scaffold IDprs_FIHLEPW02TA1K9 Open in IMG/M
Source Dataset NameGreen-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)509
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost → Green-Waste Compost Microbial Community At University Of California, Davis, Usa, From Solid State Bioreactor

Source Dataset Sampling Location
Location NameLuquillo Rain Forest, Puerto Rico
CoordinatesLat. (o)18.311389Long. (o)-65.8375Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004017Metagenome / Metatranscriptome457Y

Sequences

Protein IDFamilyRBSSequence
prs_03890840F004017GAGGMPGRAAGFLLPTVRLGFTAGIAMHARSSQQARAADQSLSEEERTRLLAKGKEVFVERCARCHNERGDKPLKTGVPLSERGLSADVIARAVSGRLRDRAEDERRGVTLYISSLMKTKDSEEGQHRTLVVSFGYESILSVGAMIIWRR

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