NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold prs_FIHLEPW02PXGNR

Scaffold prs_FIHLEPW02PXGNR


Overview

Basic Information
Taxon OID2070309004 Open in IMG/M
Scaffold IDprs_FIHLEPW02PXGNR Open in IMG/M
Source Dataset NameGreen-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost → Green-Waste Compost Microbial Community At University Of California, Davis, Usa, From Solid State Bioreactor

Source Dataset Sampling Location
Location NameLuquillo Rain Forest, Puerto Rico
CoordinatesLat. (o)18.311389Long. (o)-65.8375Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048116Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
prs_00251510F048116N/AMTPYTTRAADDFETIRQRMTALRLQRDGKCAIREGWASTDCWCYKAGPGGETLPCPPPVEDGSSA

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