Scaffold PermFrostAlaska_NODE_3966_len_2771_cov_23_367376

Overview

Basic Information

• Taxon OID: 2067725009
• Scaffold ID: PermFrostAlaska_NODE_3966_len_2771_cov_23_367376
• Source Dataset Name: Permafrost microbial communities from central Alaska, USA - Permafrost field sample
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2821
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Central Alaska, Usa

Source Dataset Sampling Location

• Location Name: Alaska, USA
• Coordinates
  • Lat. (^o): 65.7906
  • Long. (^o): -149.9102

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025185	Metagenome	203	Y
F079371	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
draft_perm_00091400	F025185	AGGAGG	MHIEQLPSVGEVVSALEAQGQRLSDADLVGASRSALTSARDALPDGWTHRRRASRWPWVACAILGTTILGLVFLTPAFRRWAASRRASGRPDGVMGDATQAPAMSAADEMGDLVYPAESDALDTAPLLDGGADN
draft_perm_00091410	F079371	N/A	VTRLARLVRIVTLPETRGVIVAAAHSETLRDIRQRAVHDRAALVRDLRNPANARDLVRSAARHPAARELASAGLMFLPLRYLPVGWAATWVAHRVVRRHLDPPAAVLDASDFGAGRPLKNVTHEAPKV