Scaffold GPKC_F5V46DG02E0PI5

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold GPKC_F5V46DG02E0PI5

Scaffold GPKC_F5V46DG02E0PI5

Overview

Basic Information
Taxon OID	2067725004 Open in IMG/M
Scaffold ID	GPKC_F5V46DG02E0PI5 Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Kansas Corn soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	530
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Kansas, USA
Coordinates	Lat. (^o)	39.211666	Long. (^o)	-96.594768	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037297	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
GPKC_03538800	F037297	N/A	LGIKVDVSGYSDTFPPGPAAYCQPDSSTAGIACGTGLTFQATGRALYVTAGPEWKIRRGKRFAPFAQALVGIVYTRSTFMMNGSDVQYTNPFTGGVLLFTSGGFAPDRSLHYADAHADAGLALAIGGGFDIRLSKRIGLRAGMDYDPTFLVRPVFPDLTPDAQGRVALRPASYERQ

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