Scaffold GPWRP_F5MPXY302HFYXC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold GPWRP_F5MPXY302HFYXC

Scaffold GPWRP_F5MPXY302HFYXC

Overview

Basic Information
Taxon OID	2067725000 Open in IMG/M
Scaffold ID	GPWRP_F5MPXY302HFYXC Open in IMG/M
Source Dataset Name	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	515
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Soil Microbial Communities From Great Prairies (Kansas, Wisconsin And Iowa)

Source Dataset Sampling Location
Location Name	Wisconsin, USA
Coordinates	Lat. (^o)	43.303611	Long. (^o)	-89.332778	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080396	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
GPWRP_01898720	F080396	GGAG	MASVTSTYARAFADVVFDQRLDPAKTLQEAQSVAELAAGSRELREVWEAPSI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.