NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold bke_il_velvet_contig_63443

Scaffold bke_il_velvet_contig_63443


Overview

Basic Information
Taxon OID2065487000 Open in IMG/M
Scaffold IDbke_il_velvet_contig_63443 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Baylor School of Medicine, Texas, USA, mock community - bke_il_velvet
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22689
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Baylor College Of Medicine, Texas, Usa, Mock Community

Source Dataset Sampling Location
Location NameBaylor School of Medicine, Houston, Texas, USA
CoordinatesLat. (o)29.7Long. (o)-95.38Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097493Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
bke_il_velvet_00423480F097493AGGAGGMYKFYSKNGQAQFYEHGVEIDGTVYGIHVDRDILRIKRRIVNDKFAETDGDFDMDTEIAKIQHTYVTFEQPTAEQLSQIQSKTFDSMSDMKQYVQSVMNGDETMSQDEINAMLLLKIAEMEVAITNEQTTN

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