Scaffold bke_il_velvet_contig_21162

Overview

Basic Information

• Taxon OID: 2065487000
• Scaffold ID: bke_il_velvet_contig_21162
• Source Dataset Name: Human fecal microbial communities from Baylor School of Medicine, Texas, USA, mock community - bke_il_velvet
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13393
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Baylor College Of Medicine, Texas, Usa, Mock Community

Source Dataset Sampling Location

• Location Name: Baylor School of Medicine, Houston, Texas, USA
• Coordinates
  • Lat. (^o): 29.7
  • Long. (^o): -95.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058555	Metagenome	135	N
F083452	Metagenome	113	N
F102167	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
bke_il_velvet_00919510	F058555	N/A	MSGTKIALLQKMKSNFDKILTEKYIPRNIQTKKDELGCVKLPAGSLICPVDFKHVTNKEGKKVTAIKYSSKHEEYHGSGIRISDECKMAMIYLIIINVLKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDINYQLISLKAWAEGEIRIALSDIIKYKHKASKVPRIKDMFVKKGESIYTCIDKNLDSDSRRRMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVVNTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
bke_il_velvet_00919680	F102167	N/A	MDINQIKKYLPVGWDVVDLIDHGIIDLDIMNGKMMGEYAAMLMVKSDVNSVGYSVTTFSFHDKDMDKLRMLIGNAIMAVGLRNNPLTGDGNTAIK
bke_il_velvet_00919710	F083452	GGAGG	MSGRVKIKIKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYIKRNI